PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS606847.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 84aa    MW: 9756.28 Da    PI: 9.6602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS606847.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-131378262
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE- CS
            B3  2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvlt 62
                  +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++++W++++++  ++ks++y+l+
  EcS606847.10 13 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSKVWNMRYRFwpNNKSRMYLLE 78
                  79*************************999999********7778*******99888888889887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-20784IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-151182IPR015300DNA-binding pseudobarrel domain
PfamPF023628.0E-101378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
GWKPENNLKF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE LEARDGISIA MEDIGTSKVW  60
NMRYRFWPNN KSRMYLLENT GELV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026024.13e-51PREDICTED: B3 domain-containing transcription factor ABI3
SwissprotQ015933e-51ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLA0A067K3N42e-50A0A067K3N4_JATCU; Uncharacterized protein
TrEMBLB4XEV79e-51B4XEV7_PEA; ABI3-like factor
STRINGfgenesh1_pg.C_scaffold_30023994e-49(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-52B3 family protein